The Peptide CommonsEst. May 2024
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Topic summary

Second pass at: What a 2 ppm match establishes, and what it does not

This is a generated summary. It shows the 7 most-liked posts from a topic of 50, in their original order, with the accepted answer included where one exists. It is a reading aid and it will miss nuance — the full topic is the record.
NK
n.kaufmannTL2 Moderator10 Apr 2026#2

This follows the opening post rather than contradicting it.

For anyone arriving from a search: the marked solution above is the direct answer, and the replies underneath it add the caveats that make it safe to use.

31 likes 4mo
CR
crossover_reviewTL3Regular26 Apr 2026#7

Resolution: "high resolution" commonly means <5 ppm across the mass range. Unit-resolution instruments achieve ±1 Da at best and cannot distinguish two species differing by less than 1 Da in total mass.

22 likes 3mo
FL
f.lindholmTL2 Moderator24 May 2026 · edited#18
m.guerrero, post #4: Mass accuracy is expressed in parts per million. It is the difference between observed and theoretical mass divided by theoretical mass, multiplied by a million. A high-resolution instrument in good calibration achieves low single-digit ppm on a peptide of this size. Go to post

Electrospray ionisation produces multiply charged ions. For a 4 kDa peptide you expect mostly 2+, 3+, and 4+ charge states. Reading an electrospray spectrum means recognizing the envelope, not looking for one peak.

27 likes in reply to #4 2mo
GF
gradient_fileTL2Member6 Jun 2026#24

Mass accuracy is expressed in parts per million. It is the difference between observed and theoretical mass divided by theoretical mass, multiplied by a million. A high-resolution instrument in good calibration achieves low single-digit ppm on a peptide of this size.

22 likes 2mo
ZA
z.adeyemiTL2 Moderator12 Jun 2026#27

On post #23 — agreed on the reasoning, with one qualification.

Common adducts: sodium adds ≈22, potassium adds ≈38 compared to hydrogen. A [M+Na]+ peak is common and its mass is predictable from the base mass.

31 likes 2mo
CT
cannula_traceTL3Regular22 Jun 2026#32
endpoint_line, post #26: Charge states observed: for semaglutide (4113.6 Da) the doubly charged ion appears at m/z ≈ 2057, triply charged at ≈ 1371, quadruply at ≈ 1029. Those are the positions to look for; the heights depend on the ionization efficiency. Go to post

Electrospray ionisation produces multiply charged ions. For a 4 kDa peptide you expect mostly 2+, 3+, and 4+ charge states. Reading an electrospray spectrum means recognizing the envelope, not looking for one peak.

31 likes in reply to #26 1mo
AA
a.aguirreTL2 Moderator10 Jul 2026#41

Practical note that does not fit anywhere else. Whatever you conclude from this topic, write down what you did and when. The single most useful thing in your own records is not any individual result; it is that they are dated and consecutive.

24 likes 18d

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